Bioinformatics Tools & Resources

This page lists a limited selection of tools & data resources by members of the compbiozurich community. Please add yours or encourage resource owners to do so.

Beacon - Discovery Services for Genomic Data

The Beacon protocol defines an open standard for genomics data discovery, developed by members of the Global Alliance for Genomics & Health. Since 2016, the Beacon protocols is being developed through the ELIXIR Beacon project as a GA4GH driver project.

Progenetix - Cancer Genome Data Resource

The Progenetix database is the largest repository for annotated copy number profiling data in cancer. The website also tracks & analyses cancer genome profiling publications for provenance & content.

Domain Name: progenetix.net
Creation Date: 2000-11-29T18:17:38.000Z

Robinson Lab at UZH and SIB - Software & Resources in Statistical Bioinformatics

The group of Mark Robinson at the UZH develops software tools and resources for biological data analysis, visualisation and benchmarking, e.g. related to RNAseq, CyTOF, CRISPR design and differential splicing.

STRING - Search Tool for the Retrieval of Interacting Genes

STRING aims to collect and present all known and predicted protein-protein interactions, covering several hundred organisms. The interactions include direct (physical) and indirect (functional) associations.