compbioZurich

DNA methylation is on the base level a binary mark. However, when calculating average methylation rates across cells in bulk samples, certain regions of the genome exhibit intermediate methylation values, indicating heterogeneous methylation patterns.

2021-05-20: more ...

ZH Sem Bioinfo - David Wissel

Supervised Hierarchical Autoencoders for Multi-Omics Integration in Cancer Survival Models

Thursday, 2021-10-14
12:00 UZH Irchel Y55-l-06/08 and ZOOM Call (12:15)

Abstract With the increasing amount of high-throughput sequencing data becoming available, the proper integration of differently sized and heterogeneous molecular and clinical groups of variables has become crucial in cancer survival models.

@mbaudis 2021-10-14: more ...

ZH Sem Bioinfo - Anthony Sonrel

Leveraging single-cell RNA-seq with CITE-seq data

Thursday, 2021-03-04
12:15 om ZOOM Call

2021-03-04: more ...

ZH Sem Bioinfo - Annika Gable

From Biomolecular Networks to Pathways: Tools for the Interpretation of Genome-Wide Experiments

Thursday, 2021-01-21
12:15 om ZOOM Call

@mbaudis 2021-01-21: more ...

ZH Sem Bioinfo - Ahmad Al Ajami

Comparison of Probabilistic Cell Type Annotation Methods Applied to Immunological CITE-seq Data

Thursday, 2021-10-07
12:15 UZH Irchel Y34-K-01 and ZOOM Call

@mbaudis 2021-10-07: more ...

ZH Sem Bioinfo - Adriano Martinelli

A computational framework to analyse phenotypic heterogeneity in spatial single cell data

Highly-multiplexed imaging technologies with single-cell resolution, such as imaging mass cytometry or multiplexed ion beam imaging, are revolutionising the field of biomedical research.

2021-05-27: more ...

UZH DMMD Seminars - Izaskun Mallona

Novel in silico methods to unveil DNA methylation heterogeneity in cohorts, tissues and cells

Tuesday, 2019-04-16
14:00 in Y15-G-40, UZH Irchel campus

@imallona 2019-04-16: more ...

Seminar in Interdisciplinary Life Science (SILS) - Michael Baudis, Bo Gao

Wrangling of copy number data in cancer genomic analysis

Tuesday, 2019-06-04
17:30 in Y03-G85, UZH Irchel campus

@KyleGao 2019-06-04: more ...

Pages tagged "news"

ZH Seminars Bioinformatics - Tom Ashhurst

Sydney Cytometry Facility, The University of Sydney and Centenary Institute

High-dimensional flow mass cytometry with Imaging Mass Cytometry in WNV and ZIKV encephalitis

ZH Seminars Bioinformatics - Reto Gerber

Censored predictors in single cell regression models

ZH Seminars Bioinformatics - Qingyao Huang

Progenetix data acquisition & processing pipeline

ZH Seminars Bioinformatics

Interval statistics reveal frequently altered gene copies across cancers

Qingyao Huang

ZH Seminars Bioinformatics - Nils Eling

HackyHour Zurich - data analysis made social

ZH Seminars Bioinformatics - Masaomi Hatakeyama

Polyploid crop genome assembly by optical genome mapping and homeolog specific genomics analysis

ZH Seminars Bioinformatics - Marija Dmitrijeva

Setting up a pipeline for horizontal gene transfer detection

ZH Seminars Bioinformatics - Marija Dmitrijeva

Dynamics of the Lung Microbiome in Patients with Cystic Fibrosis

ZH Seminars Bioinformatics - Joao Rodrigues

The Microbe Atlas Project

ZH Seminars Bioinformatics - Joao Rodrigues

ZH Seminars Bioinformatics - Helena L. Crowell

On the discovery of population-specific state transitions from single-cell RNA sequencing data

ZH Seminars Bioinformatics - David Lyon

aGOtool.org web-tool for protein-centric functional enrichment

ZH Seminars Bioinformatics - David Lyon

“aGOtool” protein centric functional enrichment

ZH Seminars Bioinformatics - Damian Szklarczyk

Analysis of date-tagged protein-protein associations derived from scientific literature.

ZH Seminars Bioinformatics - Bo Gao

Minimum Error Normalization for Copy Number Analysis

ZH Seminars Bioinformatics

Functional enrichment in the STRING protein-protein interaction database

Annika Gable

ZH Seminars Bioinformatics - Anna Quaglieri

Walter and Eliza Hall Institute of Medical Research, Melbourne

Using the transcriptome to study therapy response in leukaemia

ZH Seminars Bioinformatics - Alex H. Wagner

Washington University School of Medicine, St. Louis

Knowledge standards drive clinical interpretation of genomic variants in cancers [slides]

ZH Sem Bioinfo - Tao Fang

Protein-protein interaction prediction using co-evolution based method

ZH Sem Bioinfo - Stephany Orjuela

Analysis and Method development for High-Throughput DNA Methylation and Gene Expression with Applications to Colorectal Tumors

ZH Sem Bioinfo - Stephan Schmeing

ReSeq simulates realistic Illumina high-throughput sequencing data

ZH Sem Bioinfo - Siyuan Luo

TBD

ZH Sem Bioinfo - Simone Tiberi

distinct: a method for differential analyses via hierarchical permutation tests, with applications to single-cell data

ZH Sem Bioinfo - Rahel Paloots

Introducing Progenetix Cell Line Beacon

A comprehensive cancer cell line variant knowledge resource

ZH Sem Bioinfo - Qingyao Huang

Discovering copy number variation across multiple cancer types

ZH Sem Bioinfo - Pierre-Luc Germain

Doublet identification and characterization in single-cell data

ZH Sem Bioinfo - Moritz Schäfer

TBD

ZH Sem Bioinfo - Moritz Schäfer

Deciphering the contribution of mechanisms involved in the regulation of gene expression in mESCs

ZH Sem Bioinfo - Max Verbiest

TBD

ZH Sem Bioinfo - Max Brambach

A morphometric framework for the embryo-wide quantification of tissue organisation at single cell resolution

ZH Sem Bioinfo - Marija Dmitrijeva

A global exploration of factors contributing to rates of horizontal gene transfer

ZH Sem Bioinfo - Lukas Malfertheiner

Phylogeny and Metabolic Potential of SAR324

ZH Sem Bioinfo - Lennart Opitz

HiDRA-seq: High-Throughput SARS-CoV-2 Detection by RNA Barcoding and Amplicon Sequencing

ZH Sem Bioinfo - João Rodrigues

Modelling and estimating interactions from time-series observations of synthetic microbial community experiments

ZH Sem Bioinfo - Izaskun Mallona

[Flanking sequence preference modulates de novo DNA methylation in the mouse genome

ZH Sem Bioinfo - Giancarlo Russo

Degradation of human mRNA transcripts over time as an indicator of the time since deposition (TsD) in biological crime scene traces

ZH Sem Bioinfo - Emanuel Sonder

Stratifying sources of heterogeneity in single-cell whole-genome bisulfite sequencing datasets