ZH Sem Bioinfo - Rahel Paloots

Introducing Progenetix Cell Line Beacon

A comprehensive cancer cell line variant knowledge resource

• Thursday, 2021-06-17
• 12:15 om ZOOM Call

ZH Sem Bioinfo - Adriano Martinelli

A computational framework to analyse phenotypic heterogeneity in spatial single cell data

Highly-multiplexed imaging technologies with single-cell resolution, such as imaging mass cytometry or multiplexed ion beam imaging, are revolutionising the field of biomedical research.

ZH Sem Bioinfo - Emanuel Sonder

Stratifying sources of heterogeneity in single-cell whole-genome bisulfite sequencing datasets

DNA methylation is on the base level a binary mark. However, when calculating average methylation rates across cells in bulk samples, certain regions of the genome exhibit intermediate methylation values, indicating heterogeneous methylation patterns.

ZH Sem Bioinfo - Max Brambach

A morphometric framework for the embryo-wide quantification of tissue organisation at single cell resolution

• Thursday, 2021-05-06
• 12:15 om ZOOM Call

ZH Sem Bioinfo - Qingyao Huang

Discovering copy number variation across multiple cancer types

• Thursday, 2021-03-25
• 12:15 om ZOOM Call

ZH Sem Bioinfo - Stephany Orjuela

Analysis and Method development for High-Throughput DNA Methylation and Gene Expression with Applications to Colorectal Tumors

• Thursday, 2021-03-18
• 12:15 om ZOOM Call

ZH Sem Bioinfo - Giancarlo Russo

Degradation of human mRNA transcripts over time as an indicator of the time since deposition (TsD) in biological crime scene traces

• Thursday, 2021-03-11
• 12:15 om ZOOM Call

ZH Sem Bioinfo - Anthony Sonrel

Leveraging single-cell RNA-seq with CITE-seq data

• Thursday, 2021-03-04
• 12:15 om ZOOM Call

ZH Sem Bioinfo - Tao Fang

Protein-protein interaction prediction using co-evolution based method

• Thursday, 2021-02-04
• 12:15 om ZOOM Call

ZH Sem Bioinfo - Annika Gable

From Biomolecular Networks to Pathways: Tools for the Interpretation of Genome-Wide Experiments

• Thursday, 2021-01-21
• 12:15 om ZOOM Call

ZH Sem Bioinfo - Lukas Malfertheiner

Phylogeny and Metabolic Potential of SAR324

• Thursday, 2020-12-10
• 12:15 om ZOOM Call

ZH Sem Bioinfo - Pierre-Luc Germain

Doublet identification and characterization in single-cell data

• Thursday, 2020-11-19
• 12:15 om ZOOM Call

ZH Sem Bioinfo - João Rodrigues

Modelling and estimating interactions from time-series observations of synthetic microbial community experiments

• Thursday, 2020-11-05
• 12:15 om ZOOM Call

ZH Sem Bioinfo - Stephan Schmeing

ReSeq simulates realistic Illumina high-throughput sequencing data

• Thursday, 2020-09-03
• 12:00 in Y-55L-06, UZH Irchel Campus and 12:15 om ZOOM Call

ZH Sem Bioinfo - Lennart Opitz

HiDRA-seq: High-Throughput SARS-CoV-2 Detection by RNA Barcoding and Amplicon Sequencing

• Thursday, 2020-07-09
• 12:00 in Y-55L-06, UZH Irchel Campus and 12:15 om ZOOM Call

ZH Sem Bioinfo - Moritz Schäfer

Deciphering the contribution of mechanisms involved in the regulation of gene expression in mESCs

• Thursday, 2020-07-02
• 12:00 in Y-55L-06, UZH Irchel Campus and 12:15 om ZOOM Call

ZH Sem Bioinfo - Izaskun Mallona

[Flanking sequence preference modulates de novo DNA methylation in the mouse genome

• Thursday, 2020-06-25
• 12:15 (ZOOM Call)

ZH Seminars Bioinformatics - Qingyao Huang

ZH Sem Bioinfo - Simone Tiberi

distinct: a method for differential analyses via hierarchical permutation tests, with applications to single-cell data

• Thursday, 2020-06-04
• 12:15 (ZOOM Call)

ZH Seminars Bioinformatics - David Lyon

ZH Seminars Bioinformatics - Marija Dmitrijeva

Setting up a pipeline for horizontal gene transfer detection

• Thursday, 2020-04-16
• 12:15 (Skype Call)

ZH Seminars Bioinformatics - Reto Gerber

Censored predictors in single cell regression models

• Thursday, 2020-04-09
• 12:15 (Skype Call)

ZH Seminars Bioinformatics - Joao Rodrigues

The Microbe Atlas Project

• Thursday, 2020-03-19
• 12:15 (Skye call)

ZH Seminars Bioinformatics - Nils Eling

HackyHour Zurich - data analysis made social

• Thursday, 2020-03-12
• 12:15, Y34-J-01, UZH Irchel campus

ZH Seminars Bioinformatics - Alex H. Wagner

Washington University School of Medicine, St. Louis

ZH Seminars Bioinformatics

Interval statistics reveal frequently altered gene copies across cancers

Qingyao Huang

• Wednesday, 2019-12-04
• 12:15 in Y-55L-12, UZH Irchel campus

ZH Seminars Bioinformatics - Joao Rodrigues

• Wednesday, 2019-11-27
• 12:15 in Y-55L-12, UZH Irchel campus

ZH Seminars Bioinformatics

Functional enrichment in the STRING protein-protein interaction database

Annika Gable

• Wednesday, 2019-11-13
• 12:15 in Y-55L-12, UZH Irchel campus

ZH Seminars Bioinformatics - Anna Quaglieri

Walter and Eliza Hall Institute of Medical Research, Melbourne

Using the transcriptome to study therapy response in leukaemia

• Wednesday, 2019-10-09
• 12:15 in Y-55L-12, UZH Irchel campus

ZH Seminars Bioinformatics - Tom Ashhurst

Sydney Cytometry Facility, The University of Sydney and Centenary Institute

High-dimensional flow mass cytometry with Imaging Mass Cytometry in WNV and ZIKV encephalitis

• Wednesday, 2019-10-02
• 12:15 in Y-55L-12, UZH Irchel campus

ZH Seminars Bioinformatics - David Lyon

“aGOtool” protein centric functional enrichment

• Wednesday, 2019-06-12
• 12:15 in Y-55L-12, UZH Irchel campus

ZH Seminars Bioinformatics - Helena L. Crowell

On the discovery of population-specific state transitions from single-cell RNA sequencing data

• Wednesday, 2019-06-05
• 12:15 in Y-55L-12, UZH Irchel campus

ZH Seminars Bioinformatics - Damian Szklarczyk

Analysis of date-tagged protein-protein associations derived from scientific literature.

• Wednesday, 2019-05-22
• 12:15 in Y-55L-12, UZH Irchel campus

ZH Seminars Bioinformatics - Bo Gao

Minimum Error Normalization for Copy Number Analysis

• Wednesday, 2019-04-17
• 12:15 in Y-55L-12, UZH Irchel campus

ZH Seminars Bioinformatics - Marija Dmitrijeva

Dynamics of the Lung Microbiome in Patients with Cystic Fibrosis

• Wednesday, 2019-04-10
• 12:15 in Y-55L-12, UZH Irchel campus

ZH Seminars Bioinformatics - Masaomi Hatakeyama

Polyploid crop genome assembly by optical genome mapping and homeolog specific genomics analysis

• Wednesday, 2019-04-03
• 12:15 in Y-55L-12, UZH Irchel campus

ZH Seminars Bioinformatics - Ge Tan

Long fragments achieve lower base quality in Illumina paired-end sequencing

• Wednesday, 2019-03-20
• 12:15 in Y-55L-12, UZH Irchel campus

BIO612: Haoyang Cai: Focal Copy Number Changes in Cancer and Genome Structure